libpappsomspp
Library for mass spectrometry
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pappso::TimsFrameType1 Member List

This is the complete list of members for pappso::TimsFrameType1, including all inherited members.

checkScanNum(std::size_t scanNum) constpappso::TimsFrameBase
combineScansInTofIndexIntensityMap(TimsDataFastMap &rawSpectrum, std::size_t scan_index_begin, std::size_t scan_index_end) const overridepappso::TimsFramevirtual
combineScansInTofIndexIntensityMap(TimsDataFastMap &tof_index_intensity_map, std::size_t scan_index_begin, std::size_t scan_index_end, quint32 tof_index_begin, quint32 tof_index_end) const overridepappso::TimsFramevirtual
combineScansToTraceWithDowngradedMzResolution(std::size_t mzindex_merge_window, std::size_t scanNumBegin, std::size_t scanNumEnd, quint32 &mz_minimum_index, quint32 &mz_maximum_index) const overridepappso::TimsFramevirtual
combineScansToTraceWithDowngradedMzResolution2(std::size_t mz_index_merge_window, double mz_range_begin, double mz_range_end, std::size_t mobility_scan_begin, std::size_t mobility_scan_end, quint32 &mz_minimum_index_out, quint32 &mz_maximum_index_out) const overridepappso::TimsFramevirtual
copyAndLzfDecompress(const char *src, std::size_t len)pappso::TimsFrameType1private
cumulateScan(std::size_t scanNum, TimsDataFastMap &accumulate_into) const overridepappso::TimsFrameType1protectedvirtual
cumulateScan2(std::size_t scanNum, TimsDataFastMap &accumulate_into, quint32 accepted_tof_index_range_begin, quint32 accepted_tof_index_range_end) const overridepappso::TimsFrameType1protectedvirtual
cumulateScanIntensities(std::size_t scanNum) const overridepappso::TimsFramevirtual
cumulateScanRangeIntensities(std::size_t scanNumBegin, std::size_t scanNumEnd) const overridepappso::TimsFramevirtual
cumulateScansToTrace(std::size_t scanIndexBegin, std::size_t scanIndexEnd) const overridepappso::TimsFramevirtual
downgradeResolutionOfTofIndexIntensityPairList(std::size_t tof_index_merge_window, std::vector< TofIndexIntensityPair > &spectrum) constpappso::TimsFrameBaseprotectedvirtual
extractTimsXicListInRtRange(std::vector< XicCoordTims * >::iterator &itXicListbegin, std::vector< XicCoordTims * >::iterator &itXicListend, XicExtractMethod method) constpappso::TimsFrameprotected
getDriftTimeInMilliseconds(std::size_t scan_index) constpappso::TimsFrameBase
getId() constpappso::TimsFrameBase
getIonMobilityTraceByTofIndexRange(std::size_t tof_index_begin, std::size_t tof_index_end, XicExtractMethod method, std::size_t scan_index_begin, std::size_t scan_index_end) constpappso::TimsFrameBasevirtual
getMassSpectrumCstSPtr(std::size_t scan_index) const finalpappso::TimsFrameBasevirtual
getMassSpectrumSPtr(std::size_t scanNum) const overridepappso::TimsFrameType1virtual
getMaximumRawMassIndex() constpappso::TimsFrameBasevirtual
getMobilityScan(std::size_t scanNum, std::size_t mz_index_merge_window, double mz_range_begin, double mz_range_end, quint32 &mz_minimum_index_out, quint32 &mz_maximum_index_out) const overridepappso::TimsFramevirtual
getMsLevel() constpappso::TimsFrameBase
getMzCalibrationInterfaceSPtr() const finalpappso::TimsFrameBasevirtual
getOneOverK0Transformation(std::size_t scan_index) constpappso::TimsFrameBase
getRawTraceSPtr(std::size_t scanNum) const overridepappso::TimsFrameType1protectedvirtual
getRawValuePairList(std::size_t scanNum, quint32 accepted_tof_index_range_begin, quint32 accepted_tof_index_range_end) const overridepappso::TimsFrameType1protectedvirtual
getRtInSeconds() constpappso::TimsFrameBase
getScanIndexFromOneOverK0(double one_over_k0) constpappso::TimsFrameBase
getScanIntensityList(std::size_t scanNum) const overridepappso::TimsFrameType1virtual
getScanOffset(std::size_t scanNum) constpappso::TimsFrameprivate
getScanPeakCount(std::size_t scanNum) const overridepappso::TimsFrameType1virtual
getScanTofIndexList(std::size_t scanNum) const overridepappso::TimsFrameType1virtual
getTotalNumberOfScans() constpappso::TimsFrameBasevirtual
getTraceFromTofIndexIntensityMap(TimsDataFastMap &accumulated_scans) constpappso::TimsFrameBase
getVoltageTransformation(std::size_t scanNum) constpappso::TimsFrameBase
hasSameCalibrationData(const TimsFrameBase &other) constpappso::TimsFrameBasevirtual
lzfDecompressScan(const char *src, unsigned int src_len, char *dest, unsigned int dest_len)pappso::TimsFrameType1private
m_acqDurationInMillisecondspappso::TimsFrameBaseprotected
m_binaryDatapappso::TimsFrameprotected
m_frameIdpappso::TimsFrameBaseprotected
m_msMsTypepappso::TimsFrameBaseprotected
m_rtInSecondspappso::TimsFrameBaseprotected
m_scanCountpappso::TimsFrameBaseprotected
m_scanOffsetListpappso::TimsFrameType1private
m_scanSizeListpappso::TimsFrameType1private
m_timsC6pappso::TimsFrameBaseprotected
m_timsC7pappso::TimsFrameBaseprotected
m_timsDvStartpappso::TimsFrameBaseprotected
m_timsNdelaypappso::TimsFrameBaseprotected
m_timsSlopepappso::TimsFrameBaseprotected
m_timsTtranspappso::TimsFrameBaseprotected
m_timsVmaxpappso::TimsFrameBaseprotected
m_timsVminpappso::TimsFrameBaseprotected
msp_mzCalibrationpappso::TimsFrameBaseprotected
setAcqDurationInMilliseconds(double acquisition_duration_ms)pappso::TimsFrameBase
setMsMsType(quint8 type)pappso::TimsFrameBase
setMzCalibration(double T1_frame, double T2_frame, double digitizerTimebase, double digitizerDelay, double C0, double C1, double C2, double C3, double C4, double T1_ref, double T2_ref, double dC1, double dC2)pappso::TimsFrameBase
setMzCalibrationInterfaceSPtr(MzCalibrationInterfaceSPtr mzCalibration)pappso::TimsFrameBase
setRtInSeconds(double time)pappso::TimsFrameBase
setTimsCalibration(int tims_model_type, double C0, double C1, double C2, double C3, double C4, double C5, double C6, double C7, double C8, double C9)pappso::TimsFrameBase
TimsDirectXicExtractorpappso::TimsFrameprivate
TimsFrame(std::size_t timsId, quint32 scanNum, char *p_bytes, std::size_t len)pappso::TimsFrame
TimsFrame(const TimsFrame &other)pappso::TimsFrame
TimsFrame(std::size_t timsId, quint32 scanNum)pappso::TimsFrameprotected
TimsFrameBase(std::size_t frameId, quint32 scanCount)pappso::TimsFrameBase
TimsFrameBase(const TimsFrameBase &other)pappso::TimsFrameBase
TimsFrameType1(std::size_t timsId, quint32 scanNum, char *p_bytes, std::size_t len)pappso::TimsFrameType1
TimsFrameType1(const TimsFrameType1 &other)pappso::TimsFrameType1
unshufflePacket(const char *src)pappso::TimsFrameprivate
~TimsFrame()pappso::TimsFramevirtual
~TimsFrameBase()pappso::TimsFrameBasevirtual
~TimsFrameType1()pappso::TimsFrameType1virtual