Uses of Class
jebl.evolution.distances.BasicDistanceMatrix
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Packages that use BasicDistanceMatrix Package Description jebl.evolution.align Provides classes and interfaces for pairwise alignment of two sequences.jebl.evolution.distances -
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Uses of BasicDistanceMatrix in jebl.evolution.align
Subclasses of BasicDistanceMatrix in jebl.evolution.align Modifier and Type Class Description class
SequenceAlignmentsDistanceMatrix
Builds a distance matrix by performing a series of pairwise alignments between the specified sequences (unlike the methods in jebl.evolution.distances, which extract the pairwise distances from a multiple sequence alignment). -
Uses of BasicDistanceMatrix in jebl.evolution.distances
Subclasses of BasicDistanceMatrix in jebl.evolution.distances Modifier and Type Class Description class
F84DistanceMatrix
class
HKYDistanceMatrix
Compute HKY corrected distance matrixclass
JukesCantorDistanceMatrix
Compute jukes-cantor corrected distance matrix for a set of aligned sequences.class
TamuraNeiDistanceMatrix
Date: 22/01/2006 Time: 17:28:59
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