Package org.jmol.api
Interface JmolAnnotationParser
- All Known Implementing Classes:
AnnotationParser
,DSSR1
public interface JmolAnnotationParser
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Method Summary
Modifier and TypeMethodDescriptioncalculateDSSRStructure
(Viewer vwr, javajs.util.BS bsAtoms) catalogStructureUnits
(Viewer vwr, SV svMap, int[] modelAtomIndices, Map<String, int[]> resMap, Object object, Map<String, Integer> modelMap) javajs.util.Lst<Object>
catalogValidations
(Viewer vwr, SV validation, int[] modelAtomIndices, Map<String, int[]> valResMap, Map<String, Integer> map, Map<String, Integer> modelMap) void
fixDSSRJSONMap
(Map<String, Object> map) getAnnotationInfo
(Viewer vwr, SV a, String match, int type, int modelIndex) javajs.util.BS
getAtomBits
(Viewer vwr, String key, Object dssr, Map<String, Object> cache, int type, int modelIndex, javajs.util.BS bsModel) void
getAtomicDSSRData
(ModelSet ms, int modelIndex, float[] dssrData, String dataType) javajs.util.Lst<Float>
getAtomValidation
(Viewer vwr, String type, Atom atom) void
getBasePairs
(Viewer vwr, int modelIndex) javajs.util.P3[]
getDSSRFrame
(Map<String, Object> dssrNT) javajs.util.Lst<SV>
initializeAnnotation
(SV objAnn, int type, int modelIndex) void
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Method Details
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fixDSSRJSONMap
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getAtomBits
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getBasePairs
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getHBonds
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getAtomicDSSRData
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calculateDSSRStructure
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getAnnotationInfo
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catalogValidations
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initializeAnnotation
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getAtomValidation
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fixAtoms
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catalogStructureUnits
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setGroup1
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getDSSRFrame
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