Package org.jmol.shapebio
Class Trace
java.lang.Object
org.jmol.shape.Shape
org.jmol.shapebio.BioShapeCollection
org.jmol.shapebio.Trace
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Field Summary
FieldsModifier and TypeFieldDescriptionprivate static final int
private static final int
private static final int
private static final int
private static final int
private static final int
private static final int
private static final int
private static final int
Fields inherited from class org.jmol.shapebio.BioShapeCollection
atoms, bioShapes, isActive, madDnaRna, madHelixSheet, madOn, madTurnRandom
Fields inherited from class org.jmol.shape.Shape
bsColixSet, bsSizeSet, isBioShape, ms, myType, RADIUS_MAX, shapeID, translucentAllowed, translucentLevel, vf, vwr
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
void
setProperty
(String propertyName, Object value, javajs.util.BS bsSelected) private void
setPutty
(float[] info, javajs.util.BS bsAtoms) PyMOL-based "putty"Methods inherited from class org.jmol.shapebio.BioShapeCollection
findNearestAtomIndex, getBioShape, getMpsShapeCount, getShapeState, getSizeG, initialize, initModelSet, replaceGroup, setAtomClickability, setModelVisibilityFlags, setPropBSC, setShapeSizeRD
Methods inherited from class org.jmol.shape.Shape
appendCmd, checkBoundsMinMax, checkObjectClicked, checkObjectDragged, checkObjectHovered, coordinateInRange, encodeColor, getColix, getColixA, getColixB, getColixI, getColorCommand, getColorCommandUnk, getFontCommand, getIndexFromName, getProperty, getPropertyData, getPropShape, getShapeDetail, getSize, getTranslucentLabel, initializeShape, setModelSet, setPropS, setSize, setSizeRD, wasClicked
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Field Details
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PUTTY_NormalizedNonlinear
private static final int PUTTY_NormalizedNonlinear- See Also:
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PUTTY_RelativeNonlinear
private static final int PUTTY_RelativeNonlinear- See Also:
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PUTTY_ScaledNonlinear
private static final int PUTTY_ScaledNonlinear- See Also:
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PUTTY_AbsoluteNonlinear
private static final int PUTTY_AbsoluteNonlinear- See Also:
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PUTTY_NormalizedLinear
private static final int PUTTY_NormalizedLinear- See Also:
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PUTTY_RelativeLinear
private static final int PUTTY_RelativeLinear- See Also:
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PUTTY_ScaledLinear
private static final int PUTTY_ScaledLinear- See Also:
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PUTTY_AbsoluteLinear
private static final int PUTTY_AbsoluteLinear- See Also:
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PUTTY_ImpliedRMS
private static final int PUTTY_ImpliedRMS- See Also:
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Constructor Details
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Trace
public Trace()
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Method Details
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initShape
public void initShape()- Overrides:
initShape
in classBioShapeCollection
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setProperty
- Overrides:
setProperty
in classBioShapeCollection
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setPutty
private void setPutty(float[] info, javajs.util.BS bsAtoms) PyMOL-based "putty"- Parameters:
info
- [quality,radius,range,scale_min,scale_max,scale_power,transform]bsAtoms
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