deb_control_files:
- control
- md5sums
deb_fields:
Architecture: amd64
Depends: libc6 (>= 2.38), libcairo2 (>= 1.2.4), libcurl4t64 (>= 7.16.2), libgbtools0t64
(>= 4.44.1+dfsg), libgcc-s1 (>= 3.0), libglib2.0-0t64 (>= 2.76.0), libgtk2.0-0t64
(>= 2.12.0), libpango-1.0-0 (>= 1.14.0), libpangocairo-1.0-0 (>= 1.14.0), libstdc++6
(>= 5.2)
Description: |-
detailed comparison of two genomic sequences
Dotter is a graphical dot-matrix program for detailed comparison of two
sequences.
.
* Every residue in one sequence is compared to every residue in the
other, and a matrix of scores is calculated.
* One sequence is plotted on the x-axis and the other on the y-axis.
* Noise is filtered out so that alignments appear as diagonal lines.
* Pairwise scores are averaged over a sliding window to make the score
matrix more intelligible.
* The averaged score matrix forms a three-dimensional landscape,
with the two sequences in two dimensions and the height of the
peaks in the third. This landscape is projected onto two
dimensions using a grey-scale image - the darker grey of a peak,
the higher the score is.
* The contrast and threshold of the grey-scale image can be adjusted
interactively, without having to recalculate the score matrix.
* An Alignment Tool is provided to examine the sequence alignment that
the grey-scale image represents.
* Known high-scoring pairs can be loaded from a GFF file and overlaid
onto the plot.
* Gene models can be loaded from GFF and displayed alongside the
relevant axis.
* Compare a sequence against itself to find internal repeats.
* Find overlaps between multiple sequences by making a dot-plot of all
sequences versus themselves.
* Run Dotter in batch mode to create large, time-consuming dot-plots as
a background process.
Homepage: https://www.sanger.ac.uk/science/tools/seqtools
Installed-Size: '809'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: dotter
Priority: optional
Provides: acedb-other-dotter
Section: science
Source: seqtools (4.44.1+dfsg-7.1)
Version: 4.44.1+dfsg-7.1+b2
srcpkg_name: seqtools
srcpkg_version: 4.44.1+dfsg-7.1