deb_control_files:
- control
- md5sums
deb_fields:
Architecture: arm64
Depends: libseqlib2 (= 1.2.0+dfsg-11+b2), libfml-dev, libhts-dev, libjsoncpp-dev,
libssw-dev, zlib1g-dev, libbwa-dev
Description: |-
C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)
C++ API and command line tool that provides a rapid and user-friendly
interface to BAM/SAM/CRAM files, global sequence alignment operations
and sequence assembly. Four C libraries perform core operations in
SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
and Fermi for error correction and sequence assembly. Benchmarking
indicates that SeqLib has lower CPU and memory requirements than leading
C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
and assemble reads from a CRAM file and then align with BWA-MEM.
SeqLib also provides additional capabilities, including chromosome-aware
interval queries and read plotting. Command line tools are available for
performing integrated error correction, micro-assemblies and alignment.
.
This package contains the header files and static library.
Homepage: https://github.com/walaj/SeqLib
Installed-Size: '1191'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Multi-Arch: same
Package: libseqlib-dev
Priority: optional
Section: libdevel
Source: libseqlib (1.2.0+dfsg-11)
Version: 1.2.0+dfsg-11+b2
srcpkg_name: libseqlib
srcpkg_version: 1.2.0+dfsg-11