deb_control_files:
- control
- md5sums
- shlibs
- symbols
- triggers
deb_fields:
Architecture: amd64
Depends: libc6 (>= 2.38), libfml0 (>= 0.1+git20190320.b499514), libgcc-s1 (>= 3.0),
libhts3t64 (>= 1.17), libjsoncpp26 (>= 1.9.6), libssw0 (>= 1.1), libstdc++6 (>=
13.1), zlib1g (>= 1:1.1.4)
Description: |-
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
C++ API and command line tool that provides a rapid and user-friendly
interface to BAM/SAM/CRAM files, global sequence alignment operations
and sequence assembly. Four C libraries perform core operations in
SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
and Fermi for error correction and sequence assembly. Benchmarking
indicates that SeqLib has lower CPU and memory requirements than leading
C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
and assemble reads from a CRAM file and then align with BWA-MEM.
SeqLib also provides additional capabilities, including chromosome-aware
interval queries and read plotting. Command line tools are available for
performing integrated error correction, micro-assemblies and alignment.
Homepage: https://github.com/walaj/SeqLib
Installed-Size: '565'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Multi-Arch: same
Package: libseqlib2
Priority: optional
Section: libs
Source: libseqlib (1.2.0+dfsg-11)
Version: 1.2.0+dfsg-11+b2
srcpkg_name: libseqlib
srcpkg_version: 1.2.0+dfsg-11