deb_control_files:
- control
- md5sums
deb_fields:
Architecture: all
Depends: r-api-4.0, r-api-bioc-3.19, r-bioc-dnacopy (>= 1.78.0), r-bioc-variantannotation
(>= 1.50.0), r-bioc-genomicranges (>= 1.56.1), r-bioc-iranges (>= 2.2.1), r-cran-rcolorbrewer,
r-bioc-s4vectors (>= 0.42.1), r-cran-data.table, r-bioc-summarizedexperiment (>=
1.34.0), r-bioc-genomeinfodb (>= 1.40.1), r-bioc-genomicfeatures (>= 1.56.0),
r-bioc-rsamtools (>= 2.20.0), r-bioc-biobase (>= 2.64.0), r-bioc-biostrings (>=
2.72.1), r-bioc-biocgenerics (>= 0.50.0), r-bioc-rtracklayer (>= 1.64.0), r-cran-ggplot2,
r-cran-gridextra, r-cran-futile.logger, r-cran-vgam, r-cran-mclust, r-bioc-rhdf5
(>= 2.48.0), r-cran-matrix
Description: |-
copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of
heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by
somatic status and clonality. PureCN is designed for targeted short read
sequencing data, integrates well with standard somatic variant detection
and copy number pipelines, and has support for tumor samples without
matching normal samples.
Homepage: https://bioconductor.org/packages/PureCN/
Installed-Size: '6925'
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Package: r-bioc-purecn
Priority: optional
Section: gnu-r
Suggests: r-bioc-biocparallel, r-bioc-biocstyle, r-cran-pscbs, r-cran-r.utils, r-cran-covr,
r-cran-knitr, r-cran-optparse, r-bioc-org.hs.eg.db, r-cran-jsonlite, r-cran-markdown,
r-cran-rmarkdown, r-cran-testthat
Version: 2.10.0+dfsg-1
srcpkg_name: r-bioc-purecn
srcpkg_version: 2.10.0+dfsg-1