Class FastqTrimmerMedian

java.lang.Object
org.snpeff.fastq.FastqTrimmer
org.snpeff.fastq.FastqTrimmerMedian
Direct Known Subclasses:
FastqTrimmerAdrian

public class FastqTrimmerMedian extends FastqTrimmer
Trim fastq sequence when median quality drops below a threshold
Author:
pcingola
  • Constructor Details

    • FastqTrimmerMedian

      public FastqTrimmerMedian(int qualityThreshold, int minBases, int runningMedianLength)