Uses of Class
org.snpeff.fastq.FastqTrimmer

Packages that use FastqTrimmer
Package
Description
 
  • Uses of FastqTrimmer in org.snpeff.fastq

    Modifier and Type
    Class
    Description
    class 
    Trim fastq sequence when: - Median quality drops below a threshold (mean is calculated every 2 bases instead of every base) - Sequence length is at least 'minBases' From Adrian Platts ...Also the sliding window was not every base.
    class 
    Trim fastq sequence when median quality drops below a threshold