Package org.snpeff.interval
Class CircularCorrection
java.lang.Object
org.snpeff.interval.CircularCorrection
Correct circular genomic coordinates
Nomenclature: We use coordinates at the beginning of the chromosme and negative coordinates
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionboolean
correct()
Return a circular corrected transcript or null if no correction is neededboolean
boolean
isDebug()
void
setCorrectLargeGap
(boolean correctLargeGap) void
setDebug
(boolean debug) toString()
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Constructor Details
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CircularCorrection
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CircularCorrection
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Method Details
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correct
public boolean correct()Return a circular corrected transcript or null if no correction is needed -
isCorrected
public boolean isCorrected() -
isDebug
public boolean isDebug() -
setCorrectLargeGap
public void setCorrectLargeGap(boolean correctLargeGap) -
setDebug
public void setDebug(boolean debug) -
toString
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