Class GeneIds

java.lang.Object
org.snpeff.reactome.GeneIds

public class GeneIds extends Object
Maps different Gene IDs: - ENSEMBL Gene ID to transcript ID - ENSEMBL Gene ID to Gene Name - ENSEMBL Gene ID to Refseq Gene ID - ENSEMBL Gene ID to Refseq Protein ID
Author:
pcingola
  • Constructor Details

    • GeneIds

      public GeneIds(String fileName)
  • Method Details

    • getId2geneName

      public IdMap getId2geneName()
    • getId2refseqId

      public IdMap getId2refseqId()
    • getId2refseqProtId

      public IdMap getId2refseqProtId()
    • getId2tr

      public IdMap getId2tr()
    • load

      protected void load(String fileName)
      Load data from file
      Parameters:
      fileName -