Package org.snpeff.pdb
Class DistanceResult
java.lang.Object
org.snpeff.pdb.DistanceResult
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Field Summary
Fields -
Constructor Summary
ConstructorsConstructorDescriptionDistanceResult
(String line) DistanceResult
(String proteinId, org.biojava.nbio.structure.AminoAcid aa1, org.biojava.nbio.structure.AminoAcid aa2, Transcript tr1, Transcript tr2, double distance) -
Method Summary
Modifier and TypeMethodDescriptionint
Compare by genomic positionboolean
Same genomic positionsgetId()
boolean
void
setAa1
(org.biojava.nbio.structure.AminoAcid aa) void
setAa2
(org.biojava.nbio.structure.AminoAcid aa) void
setTr1
(Transcript tr) void
setTr2
(Transcript tr) toString()
Show genomic positions only
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Field Details
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debug
public static boolean debug -
aa1
public char aa1 -
aa2
public char aa2 -
aaPos1
public int aaPos1 -
aaPos2
public int aaPos2 -
chr1
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chr2
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pos1
public int pos1 -
pos2
public int pos2 -
distance
public double distance -
proteinId
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pdbChainId1
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pdbChainId2
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trId1
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trId2
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Constructor Details
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DistanceResult
public DistanceResult() -
DistanceResult
public DistanceResult(String proteinId, org.biojava.nbio.structure.AminoAcid aa1, org.biojava.nbio.structure.AminoAcid aa2, Transcript tr1, Transcript tr2, double distance) -
DistanceResult
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Method Details
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compareByPos
Compare by genomic position -
equalPos
Same genomic positions -
getId
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hasValidCoords
public boolean hasValidCoords() -
setAa1
public void setAa1(org.biojava.nbio.structure.AminoAcid aa) -
setAa2
public void setAa2(org.biojava.nbio.structure.AminoAcid aa) -
setTr1
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setTr2
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toString
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toStringPos
Show genomic positions only
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