Package org.snpeff.codons
Class FindRareAaIntervals
java.lang.Object
org.snpeff.codons.FindRareAaIntervals
Find intervals where rare amino acids occur
- Author:
- pablocingolani
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Field Summary
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Constructor Summary
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Method Summary
Modifier and TypeMethodDescriptionfindRareAa
(String proteinFastaFile) Find all sites having rare amino acidsdouble
void
setRareThreshold
(double rareThreshold) void
setVerbose
(boolean verbose) toString()
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Field Details
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RARE_THRESHOLD
public static final double RARE_THRESHOLD- See Also:
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Constructor Details
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FindRareAaIntervals
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Method Details