Class TranscriptSet

java.lang.Object
org.snpeff.spliceSites.TranscriptSet
All Implemented Interfaces:
Iterable<Transcript>

public class TranscriptSet extends Object implements Iterable<Transcript>
A set of transcripts
Author:
pablocingolani
  • Field Details

    • MAX_TRANSCRIPTS_PER_GENE

      public static final int MAX_TRANSCRIPTS_PER_GENE
      See Also:
  • Constructor Details

    • TranscriptSet

      public TranscriptSet(Genome genome)
  • Method Details

    • filter

      public void filter()
      Filter out "bad transcripts"
    • getByChromo

      public List<Transcript> getByChromo(String chrName)
    • iterator

      public Iterator<Transcript> iterator()
      Specified by:
      iterator in interface Iterable<Transcript>
    • setDebug

      public void setDebug(boolean debug)
    • setVerbose

      public void setVerbose(boolean verbose)