Uses of Class
org.snpeff.stats.CountByType
Packages that use CountByType
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Uses of CountByType in org.snpeff.coverage
Methods in org.snpeff.coverage that return CountByTypeMethods in org.snpeff.coverage with parameters of type CountByTypeModifier and TypeMethodDescriptionCountReadsOnMarkers.probabilityTable
(CountByType prob) Show probabilities -
Uses of CountByType in org.snpeff.interval
Methods in org.snpeff.interval that return CountByType -
Uses of CountByType in org.snpeff.nextProt
Methods in org.snpeff.nextProt that return CountByType -
Uses of CountByType in org.snpeff.stats
Methods in org.snpeff.stats that return CountByTypeModifier and TypeMethodDescriptionReadsOnMarkersModel.getCountBases()
VariantStats.getCountByChangeType()
Number of variants by typeVariantEffectStats.getCountByEffect()
VariantEffectStats.getCountByFunctionalClass()
VariantEffectStats.getCountByGeneRegion()
VariantEffectStats.getCountByImpact()
GeneCountByTypeTable.getCounter
(String type) Get counter for this typeGeneCountByTypeTable.getCounterSize
(String type) Get size counter for this typeReadsOnMarkersModel.getCountMarkers()
ReadsOnMarkersModel.getProb()
ReadsOnMarkersModel.getRawCountBases()
ReadsOnMarkersModel.getRawCountMarkers()