Package org.snpeff.fileIterator
Class BlastResultEntry
java.lang.Object
org.snpeff.fileIterator.BlastResultEntry
- All Implemented Interfaces:
Comparable<BlastResultEntry>
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Field Summary
Fields -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionint
void
Swap start- end positions if they are not in ordertoString()
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Field Details
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qseqid
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sseqid
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pident
public double pident -
length
public int length -
mismatch
public int mismatch -
gapopen
public int gapopen -
qstart
public int qstart -
qend
public int qend -
sstart
public int sstart -
send
public int send -
evalue
public double evalue -
bitscore
public int bitscore
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Constructor Details
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BlastResultEntry
public BlastResultEntry()
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Method Details
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compareTo
- Specified by:
compareTo
in interfaceComparable<BlastResultEntry>
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fixStartEnd
public void fixStartEnd()Swap start- end positions if they are not in order -
toString
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