Class ProteinFastaWriter

java.lang.Object
org.snpeff.snpEffect.ProteinFastaWriter

public class ProteinFastaWriter extends Object
Writes protein sequences to a FASTA file
Author:
Pablo Cingolani
  • Constructor Details

    • ProteinFastaWriter

      public ProteinFastaWriter(String fileName, boolean noRef, boolean verbose)
  • Method Details

    • close

      public void close()
      Close file
    • write

      public void write(Variant var, VariantEffects variantEffects)
      Append ALT protein sequence to fasta protein file