Package org.snpeff.stats
Class GenotypeStats
java.lang.Object
org.snpeff.stats.GenotypeStats
- All Implemented Interfaces:
SamplingStats<VcfEntry>
Calculate statistics on genotype
- Author:
- pablocingolani
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Constructor Details
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GenotypeStats
public GenotypeStats()
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Method Details
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getAlleleCount
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getAlleleCountHistoUrl
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getAlleleFrequency
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getAlleleFrequencyHistoUrl
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getHetBySampleUrl
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getHomBySampleUrl
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getHomHetTable
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getMissingBySampleUrl
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hasData
public boolean hasData()Description copied from interface:SamplingStats
Does this statistic have any data?- Specified by:
hasData
in interfaceSamplingStats<VcfEntry>
- Returns:
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sample
Update counters- Specified by:
sample
in interfaceSamplingStats<VcfEntry>
- Parameters:
vcfEntry
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toString
Show results to stdout
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