deb_control_files:
- control
- md5sums
deb_fields:
Architecture: arm64
Built-Using: golang-1.23 (= 1.23.2-1), golang-github-biogo-hts (= 1.4.5+dfsg1-1),
golang-github-brentp-bix (= 0.0~git20190718.00aa7a7+ds-2), golang-github-brentp-goluaez
(= 0.0~git20160116.dd35d08-2), golang-github-brentp-irelate (= 0.0.1+ds-1), golang-github-brentp-vcfgo
(= 0.0~git20190824.654ed2e-2), golang-github-cespare-xxhash (= 2.3.0-1), golang-github-dsnet-compress
(= 0.0.2~git20230904.39efe44+dfsg1-2), golang-github-klauspost-compress (= 1.17.10+ds1-1),
golang-github-klauspost-pgzip (= 1.2.6-1), golang-github-pkg-errors (= 0.9.1-3),
golang-github-shenwei356-xopen (= 0.0~git20231203.5ad79ea-1), golang-github-ulikunitz-xz
(= 0.5.6-2), golang-github-yuin-gluare (= 0.0~git20170607.d7c94f1-2), golang-github-yuin-gopher-lua
(= 0.0~git20170915.0.eb1c729-5), golang-toml (= 1.4.0-1)
Depends: libc6 (>= 2.34)
Description: |-
annotate a VCF with other VCFs/BEDs/tabixed files
Vcfanno allows you to quickly annotate your VCF with any number of INFO
fields from any number of VCFs or BED files. It uses a simple conf file
to allow the user to specify the source annotation files and fields and
how they will be added to the info of the query VCF.
.
* For VCF, values are pulled by name from the INFO field with special
cases of ID and FILTER to pull from those VCF columns.
* For BED, values are pulled from (1-based) column number.
* For BAM, depth (count), "mapq" and "seq" are currently supported.
.
Vcfanno is written in go and it supports custom user-scripts written in
Lua. It can annotate more than 8000 variants per second with 34
annotations from 9 files on a modest laptop and over 30K variants per
second using 12 processes on a server.
Homepage: https://github.com/brentp/vcfanno
Installed-Size: '7282'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: vcfanno
Priority: optional
Section: science
Source: vcfanno (0.3.5+ds-2)
Version: 0.3.5+ds-2+b3
srcpkg_name: vcfanno
srcpkg_version: 0.3.5+ds-2